Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs57437999 chr6:41345126 A/G 9.31E-7 132 45.1 25.77 11.53 KM Plot
TGCT rs5744897 chr12:133226831 C/T 1.32E-5 134 44.05 34.45 46.87 KM Plot
TGCT rs57452884 chr12:98730026 C/A 9.69E-6 134 40.57 77.17 41.28 KM Plot
TGCT rs57463770 chr7:127746393 C/A 1.25E-13 133 45.47 36.23 17.1 KM Plot
TGCT rs57514701 chr10:1146169 G/A 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs57716900 chr3:196198034 A/T 0.000143 130 35.4 41.27 43.6 KM Plot
TGCT rs57824371 chr6:105537702 TC/T 2.71E-5 129 20.42 45.83 42.18 KM Plot
TGCT rs579861 chr2:239348995 A/C 0.000156 134 44.13 41.33 113.35 KM Plot
TGCT rs58003804 chr12:129567952 A/G 2.51E-9 132 38.2 49.93 15.8 KM Plot
TGCT rs58058781 chr2:29494686 T/C 0 134 42.27 25.02 0.57 KM Plot
TGCT rs58069917 chr14:71043557 C/T 1.77E-5 131 41.27 66.9 21.43 KM Plot
TGCT rs5816444 chr16:27807678 CA/C 1.04E-5 133 46.53 33.55 17.27 KM Plot
TGCT rs581777 chr3:172421185 G/A 1.85E-5 131 45.83 37.42 24.15 KM Plot
TGCT rs58184654 chr19:37921486 GA/G 1.76E-13 133 45.47 36.12 17.1 KM Plot
TGCT rs58256618 chr4:154723364 G/A 0.000117 133 40.57 49.93 45.1 KM Plot